IGV Session Generation
Implementation of the igv_session_generation
step
This step takes as the input the output of the following steps and generates an IGV session XML file that displays the results as genome tracks:
ngs_mapping
variant_annotation
orvariant_calling
Step Input
The IGV session generation step takes as the input of the following CUBI pipeline steps:
ngs_mapping
variant_annotation
orvariant_calling
Step Output
Global Configuration
Default Configuration
The default configuration is as follows.
step_config:
igv_session_generation:
#path_ngs_mapping: ../ngs_mapping
#path_variant_phasing: ''
#path_variant_annotation: ''
#path_variant_calling: ''
#
# defaults to ngs_mapping tool
#tools_ngs_mapping: []
#
# defaults to variant_annotation tool
#tools_variant_calling: []
Reports
Currently, no reports are generated.