Somatic Neoepitope Prediction
Implementation of the somatic_neoepitope_prediction
step
The somatic_neoepitope_prediction step allows for the prediction of neoepitopes from somatic (small) variant calling results and a transcript database such as ENSEMBL. Further, the step allows for the binding prediction to a given set of HLA alleles.
Note
Status: not implemented yet
Step Input
Note
TODO
Step Output
Note
TODO
Default Configuration
The default configuration is as follows.
step_config:
somatic_neoepitope_prediction:
path_somatic_variant_calling: REQUIRED # REQUIRED