NGS Data QC
Implementation of the ngs_data_qc
step
Default Configuration
The default configuration is as follows.
step_config:
ngs_data_qc:
# Override data set configuration search paths for FASTQ files
#path_link_in: ''
#tools: # Options: 'fastqc', 'picard'
# - fastqc
# - picard
#picard:
# path_ngs_mapping: ../ngs_mapping
#
# # Required when CollectHsMetrics is among the programs
# path_to_baits: ''
#
# # When missing, same as baits
# path_to_targets: ''
#
# # Exon enrichment kit name (optional)
# bait_name: ''
# programs: # REQUIRED
#fastqc: {}