NGS Sanity Checking
Implementation of the ngs_sanity_checking
step
Perform sanity checking from mapped reads for germline sample sheets, optionally taking the result
of hla_typing
into consideration.
Note
Status: not implemented yet
Step Input
Note
TODO
Step Output
Note
TODO
Default Configuration
The default configuration is as follows.
# Default configuration ngs_sanity_checking
step_config:
ngs_sanity_checking:
path_ngs_mapping: ../path_ngs_mapping # REQUIRED
path_hla_typing: ../path_hla_typing # OPTIONAl
check_hla: true